Filtering summary

The filtered ATAC-seq dataset contains accessibility profiles for 8 samples.

Signal has been summarized for the following region sets:

Fragment data IS available.

The following filtering steps were applied to the dataset:

• Regions with a coverage of less than 1 in more than 25 % of samples have been removed.
• Regions and fragments on chromosomes chrM have been removed.

Regions in the datasets were filtered according to the above criteria.

Figure 1

Overall retained and removed regions per region type

The plot below summarizes the number of retained and removed regions per filtering step.

Filtering step

region_covg chromosomes

Figure 2

Retained and removed regions per region type and filtering step